Core labs and research departments require a robust computing resource for multiple researchers and tasks. Our Whole Genome Sequencing Server offers immediate computing power for medium to large scale sequencing projects including Genome Wide Association Studies (GWAS). PSSC Labs is partnering with leading academic, research and commercial organizations to deliver the most turn key computing solutions possible. We have certified the Whole Genome Sequencing Server compatible with commercial bioinformatics software packages and open source bioinformatics software packages. This system is the perfect tool for desktop sequencing. PSSC Labs System Engineers are available to discuss the installation and testing of any bioinformatics packages.
CERTIFIED SOFTWARE COMPATIBILITY
The Whole Genome Sequencing Server is proven compatible with the following software packages:
Genomics Workbench (CLC bio®)
Lifescope (Life Technologies®)
SYSTEM PERFORMANCE
Biologists at the University of California are sequencing Drosophila (fruity fly) samples. The genome is approximately 1.2 x 108 base pairs. One lane of paired-end, 75bp data from an Illumina® GA2 machine gives about 25X coverage of a genome. Roughly 35 million pairs of reads per lane or 2* 75 *35e6 = 5.25 e10 base pairs of data. Researches sequence three lanes per sample. Using a custom developed analysis pipeline a single sample can be processed in less than 12 hours. According to the Biologists this analysis includes much more than performing simple alignments.
RESEARCH APPLICATIONS
The Whole Genome Sequencing Server offers the ideal platform for the following research applications:
ChIP-Seq
De novo Assembly of Sanger & High Throughput Sequencing
Genome Wide Associations Studies (GWAS)
Paired End Reads
RNA Sequencing
miRNA
Whole Transcriptome
Read Mapping of Sanger & High Throughput Sequencing
Small Genome Sequencing
Microbial & Virus De Novo & Re-Sequencing
Mitochondrial Sequencing
SNP Detection
Targeted Re-Sequencing
Detection of Somatic & Germ- Line Mutations
Trip Sequences
Whole Genome/Whole Exome Validation
WHOLE GENOME SEQUENCING SERVER GIVES LIFE TO FLORAL GENOME PROJECT
Biologists at Pennsylvania State University collaborate with other institutions to study the evolutionary diversification of floral regulatory genes and pathways. This researcher requires screening, library building and sequencing floral gene families for molecular evolutionary studies. Helping to drive this research is a Whole Genome Sequencing Server from PSSC Labs. The system arrived preinstalled with CLC bio's Genomics Server software package. This ready to run computing solution allowed researchers a true plug and play system allowing them to focus on their work and not the computer system.
CLC BIO SELECTS PSSC LABS WGS FOR GENOMICS MACHINE PLATFORM
CLC bio, a leading provider of sequencing software packages, recently selected the Whole Genome Sequencing Server for their turn-key hardware / software Genomics Machine platform. The solution comes standard with 64GB of high performance memory (expandable to 256GB) and 8TB of storage space (expandable to 20TB). CLC bio offers the Genomics Machine world-wide. PSSC Labs provides onsite support
PSSC LABS IS THE WORLD'S LEADING PROVIDER OF TURN KEY SOLUTIONS FOR NGS
For more information on PSSC Labs involvement in Next Generation Sequencing please view here >>
